Chen Sun

My research covers

Algorithms for Bioinformatics

Data Management and Data Infrastructure

Machine Learning

Education: Ph.D. in Computer Science and Engineering, Penn State, Aug 2018.
Ph.D. Academic Advisor: Paul Medvedev.

Selected Publications( Google Scholar)

(* co-first author)

Yoann Dufresne, Chen Sun, Pierre Marijon, Dominique Lavenier, Cedric Chauve and Rayan Chikhi.
A Graph-Theoretic Barcode Ordering Model for Linked-Reads
The 20th International Workshop on Algorithms in Bioinformatics
WABI, 2020.

Yanjun Gao, Chen Sun and Rebecca J. Passonneau.
Automated Pyramid Summarization Evaluation.
The 23rd Conference on Computational Natural Language Learning
CoNLL, 2019.

Chen Sun, David Stein, Ke Wu, Joel Young.
Distribution-level feature monitoring and consistency reporting.
US Patent App. 15/844,861, 2019

Chen Sun and Paul Medvedev.
Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Bioinformatics, 2018. [preprint]

Chen Sun*, Robert Harris*, Rayan Chikhi, Paul Medvedev.
AllSome Sequence Bloom Trees.
The 21th International Conference on Research in Computational Molecular Biology
(RECOMB, 2017)
journal version: Journal of Computational Biology, 2018.

Chen Sun and Paul Medvedev.
VarMatch: Robust Matching of Small Variant Datasets Using Flexible Scoring Schemes.
Bioinformatics, 2016. [preprint]
presented at Intelligent Systems for Molecular Biology (ISMB) HitSeq 2016.

I am also a reviewer of peer review journals and conferences, including ISMB, RECOMB.

Contact Information

Email:

Address:

LinkedIn Corporation, 
700 E Middlefield Rd, Mountain View, CA 94043

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