Chen Sun

My research covers

Algorithms for Bioinformatics

Data Management and Data Infrastructure

Machine Learning

Education: Ph.D. in Computer Science and Engineering, Penn State, Dec 2018.
Ph.D. Academic Advisor: Paul Medvedev.

Selected Publications( Google Scholar)

(* co-first author)

Yanjun Gao, Chen Sun and Rebecca J. Passonneau.
Automated Pyramid Summarization Evaluation.
The 23rd Conference on Computational Natural Language Learning
CoNLL, 2019.

Chen Sun, David Stein, Ke Wu, Joel Young.
Distribution-level feature monitoring and consistency reporting.
US Patent App. 15/844,861, 2019

Chen Sun and Paul Medvedev.
Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Bioinformatics, 2018. [preprint]

Chen Sun*, Robert Harris*, Rayan Chikhi, Paul Medvedev.
AllSome Sequence Bloom Trees.
The 21th International Conference on Research in Computational Molecular Biology
(RECOMB, 2017)
journal version: Journal of Computational Biology, 2018.
the result is reported by Cell Systems, 2017.

Yongbing Zhao*, Chen Sun*, Dongyu Zhao*, et al.
PGAP-X: Extension on pan-genome analysis pipeline.
BMC Genomics, 2017.

Chen Sun and Paul Medvedev.
VarMatch: Robust Matching of Small Variant Datasets Using Flexible Scoring Schemes.
Bioinformatics, 2016. [preprint]
presented at Intelligent Systems for Molecular Biology (ISMB) HitSeq 2016.

Arkarachai Fungtammasan, Guruprasad Ananda, Suzanne Hile, Marcia Su, Chen Sun, Robert Harris, Paul Medvedev, Kristin Eckert and Kateryna Makova.
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.
Genome Research, 2015.

I am also a reviewer of peer review journals and conferences, including ISMB, RECOMB.

Contact Information

Email:

Address:

LinkedIn Corporation, 
700 E Middlefield Rd, Mountain View, CA 94043

Useful Links

Quotes That Inspire Me

"It's actually not painful to learn something, if you do it incrementally."
One thing at a time: "If you chase two rabbits, you will catch neither one."