Chen Sun
Publications
Contact Info
Links
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Current Position: Applied Research Engineer(System and Infrastructure), LinkedIn Corporation
My research covers
- Algorithms in Bioinformatics and Computational Biology
- Data Management
- Machine Learning
Education: Ph.D. in Computer Science and Engineering, Pennsylvania State University.
Ph.D. Academic Advisor: Paul Medvedev.
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(* co-first author)
- Yanjun Gao, Chen Sun and Rebecca J. Passonneau.
Automated Pyramid Summarization Evaluation.
The 23rd Conference on Computational Natural Language Learning
CoNLL, 2019.
- Chen Sun and Paul Medvedev.
Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Bioinformatics, 2018. [preprint]
- Chen Sun*, Robert Harris*, Rayan Chikhi, Paul Medvedev.
AllSome Sequence Bloom Trees.
The 21th International Conference on Research in Computational Molecular Biology
(RECOMB, 2017)
journal version: Journal of Computational Biology, 2018.
the result is reported by Cell Systems, 2017.
- Chen Sun, David Stein, Ke Wu, Joel Young.
Distribution-level feature monitoring and consistency reporting.
US Patent Pend.
- Yongbing Zhao*, Chen Sun*, Dongyu Zhao*, et al.
PGAP-X: Extension on pan-genome analysis pipeline.
BMC Genomics, 2017.
- Chen Sun and Paul Medvedev.
VarMatch: Robust Matching of Small Variant Datasets Using Flexible Scoring Schemes.
Bioinformatics, 2016. [preprint]
presented at Intelligent Systems for Molecular Biology (ISMB) HitSeq 2016.
- Arkarachai Fungtammasan, Guruprasad Ananda, Suzanne Hile, Marcia Su, Chen Sun, Robert Harris, Paul Medvedev, Kristin Eckert and Kateryna Makova.
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.
Genome Research, 2015.
I am also a reviewer of peer review journals and conferences, including ISMB, RECOMB.
Contact Information
Useful Links
Quotes
One thing at a time: "If you chase two rabbits, you will catch neither one."
Hobby
Long-distance running (5k, 10k, chasing rabbit...)
